IL_8G31_013

3D structure

PDB id

8G31 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G31_013 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.099

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8G31|1|B|C|239
8G31|1|B|C|240
8G31|1|B|A|241
8G31|1|B|G|242
8G31|1|B|U|243
8G31|1|B|A|244
8G31|1|B|G|245
*
8G31|1|B|C|253
8G31|1|B|G|254
8G31|1|B|A|255
8G31|1|B|A|256
8G31|1|B|C|257
8G31|1|B|G|258

Current chains

Chain B

23S

Nearby chains

Chain 3

50S ribosomal protein L35

Chain L

50S ribosomal protein L15