IL_8G31_021

3D structure

PDB id

8G31 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUAAC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G31_021 not in the Motif Atlas

Homologous match to IL_5J7L_258

Geometric discrepancy: 0.1264

The information below is about IL_5J7L_258

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_66798.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8G31|1|B|U|606
8G31|1|B|U|607
8G31|1|B|A|608
8G31|1|B|A|609
8G31|1|B|C|610
*
8G31|1|B|G|618
8G31|1|B|G|619
8G31|1|B|G|620
8G31|1|B|A|621
8G31|1|B|G|622

Current chains

Chain B

23S

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15