IL_8G31_023

3D structure

PDB id

8G31 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8G31|1|B|G|801, 8G31|1|B|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G31_023 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.1009

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8G31|1|B|G|674
8G31|1|B|A|675
8G31|1|B|A|676
8G31|1|B|A|677
8G31|1|B|C|678
*
8G31|1|B|G|799
8G31|1|B|A|800
8G31|1|B|G|801
8G31|1|B|A|802
8G31|1|B|U|803
8G31|1|B|A|804
8G31|1|B|G|805
8G31|1|B|C|806

Current chains

Chain B

23S

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15