IL_8G31_039

3D structure

PDB id

8G31 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G31_039 not in the Motif Atlas

Geometric match to IL_5J7L_278

Geometric discrepancy: 0.1154

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

8G31|1|B|U|1004
8G31|1|B|C|1005
8G31|1|B|C|1006
8G31|1|B|C|1007
8G31|1|B|A|1008
8G31|1|B|A|1009
8G31|1|B|A|1010
8G31|1|B|G|1011
*
8G31|1|B|C|1150
8G31|1|B|A|1151

Current chains

Chain B

23S

Nearby chains

Chain J

50S ribosomal protein L13

Chain Q

50S ribosomal protein L20