3D structure

PDB id
8G31 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GAAG*CCUGC
Length
9 nucleotides
Bulged bases
8G31|1|B|U|1559
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G31_057 not in the Motif Atlas
Homologous match to IL_5J7L_296
Geometric discrepancy: 0.2016
The information below is about IL_5J7L_296
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_58112.2
Basepair signature
cWW-cWW-L-R-cWW
Number of instances in this motif group
4

Unit IDs

8G31|1|B|G|1432
8G31|1|B|A|1433
8G31|1|B|A|1434
8G31|1|B|G|1435
*
8G31|1|B|C|1557
8G31|1|B|C|1558
8G31|1|B|U|1559
8G31|1|B|G|1560
8G31|1|B|C|1561

Current chains

Chain B
23S

Nearby chains

Chain C
50S ribosomal protein L2

Coloring options:


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