IL_8G31_089

3D structure

PDB id

8G31 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAU*AGGUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G31_089 not in the Motif Atlas

Geometric match to IL_5J7L_332

Geometric discrepancy: 0.3593

The information below is about IL_5J7L_332

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61476.2

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

7

Unit IDs

8G31|1|B|A|2297
8G31|1|B|A|2298
8G31|1|B|U|2299
*
8G31|1|B|A|2317
8G31|1|B|G|2318
8G31|1|B|G|2319
8G31|1|B|U|2320
8G31|1|B|U|2321

Current chains

Chain B

23S

Nearby chains

Chain A

5S ribosomal RNA; 5S rRNA

Chain F

50S ribosomal protein L5