IL_8G31_103

3D structure

PDB id

8G31 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G31_103 not in the Motif Atlas

Geometric match to IL_7A0S_094

Geometric discrepancy: 0.147

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8G31|1|B|C|2652
8G31|1|B|U|2653
8G31|1|B|A|2654
8G31|1|B|G|2655
8G31|1|B|U|2656
8G31|1|B|A|2657
8G31|1|B|C|2658
*
8G31|1|B|G|2663
8G31|1|B|G|2664
8G31|1|B|A|2665
8G31|1|B|C|2666
8G31|1|B|C|2667
8G31|1|B|G|2668

Current chains

Chain B

23S

Nearby chains

Chain G

50S ribosomal protein L6