IL_8G31_126

3D structure

PDB id

8G31 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8G31|1|v|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G31_126 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1293

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8G31|1|v|G|147
8G31|1|v|G|148
8G31|1|v|A|149
8G31|1|v|U|150
8G31|1|v|A|151
8G31|1|v|A|152
8G31|1|v|C|153
*
8G31|1|v|G|168
8G31|1|v|C|169
8G31|1|v|U|170
8G31|1|v|A|171
8G31|1|v|A|172
8G31|1|v|U|173
8G31|1|v|A|174
8G31|1|v|C|175

Current chains

Chain v

16S

Nearby chains

Chain s

30S ribosomal protein S20