IL_8G31_128

3D structure

PDB id

8G31 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

8G31|1|v|U|244, 8G31|1|v|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G31_128 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.1264

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

8G31|1|v|G|242
8G31|1|v|A|243
8G31|1|v|U|244
8G31|1|v|U|245
8G31|1|v|A|246
8G31|1|v|G|247
*
8G31|1|v|C|277
8G31|1|v|G|278
8G31|1|v|A|279
8G31|1|v|C|280
8G31|1|v|G|281
8G31|1|v|A|282
8G31|1|v|U|283
8G31|1|v|C|284

Current chains

Chain v

16S

Nearby chains

Chain k

30S ribosomal protein S12

Chain p

30S ribosomal protein S17