IL_8G31_147

3D structure

PDB id

8G31 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAGAG*UGGA

Length

9 nucleotides

Bulged bases

8G31|1|v|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G31_147 not in the Motif Atlas

Homologous match to IL_5J7L_033

Geometric discrepancy: 0.1011

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8G31|1|v|U|662
8G31|1|v|A|663
8G31|1|v|G|664
8G31|1|v|A|665
8G31|1|v|G|666
*
8G31|1|v|U|740
8G31|1|v|G|741
8G31|1|v|G|742
8G31|1|v|A|743

Current chains

Chain v

16S

Nearby chains

Chain e

30S ribosomal protein S6, non-modified isoform

Chain n

30S ribosomal protein S15

Chain q

30S ribosomal protein S18