IL_8G31_175

3D structure

PDB id

8G31 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G31_175 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1125

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8G31|1|v|G|1401
8G31|1|v|C|1402
8G31|1|v|C|1403
8G31|1|v|C|1404
*
8G31|1|v|G|1497
8G31|1|v|U|1498
8G31|1|v|A|1499
8G31|1|v|A|1500
8G31|1|v|C|1501

Current chains

Chain v

16S

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA