3D structure

PDB id
8G31 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UGC*GUG
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G31_178 not in the Motif Atlas
Homologous match to IL_4LFB_061
Geometric discrepancy: 0.1784
The information below is about IL_4LFB_061
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
Isolated non-canonical cWW pair
Motif group
IL_86319.3
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
269

Unit IDs

8G31|1|v|U|1425
8G31|1|v|G|1426
8G31|1|v|C|1427
*
8G31|1|v|G|1473
8G31|1|v|U|1474
8G31|1|v|G|1475

Current chains

Chain v
16S

Nearby chains

Chain B
Large subunit ribosomal RNA; LSU rRNA
Chain K
50S ribosomal protein L14

Coloring options:


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