IL_8G38_104

3D structure

PDB id

8G38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

8G38|1|B|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G38_104 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.088

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

8G38|1|B|C|2636
8G38|1|B|U|2637
8G38|1|B|G|2638
8G38|1|B|A|2639
8G38|1|B|G|2640
*
8G38|1|B|C|2774
8G38|1|B|G|2775
8G38|1|B|A|2776
8G38|1|B|G|2777
8G38|1|B|A|2778
8G38|1|B|U|2779
8G38|1|B|G|2780
8G38|1|B|A|2781
8G38|1|B|G|2782

Current chains

Chain B

23S

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13