IL_8G38_107

3D structure

PDB id

8G38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

8G38|1|B|U|2689, 8G38|1|B|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G38_107 not in the Motif Atlas

Homologous match to IL_5J7L_348

Geometric discrepancy: 0.0776

The information below is about IL_5J7L_348

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

8G38|1|B|U|2687
8G38|1|B|G|2688
8G38|1|B|U|2689
8G38|1|B|U|2690
8G38|1|B|C|2691
*
8G38|1|B|G|2718
8G38|1|B|G|2719
8G38|1|B|U|2720
8G38|1|B|A|2721
8G38|1|B|G|2722

Current chains

Chain B

23S

Nearby chains

Chain D

50S ribosomal protein L3

Chain N

50S ribosomal protein L17

Chain P

50S ribosomal protein L19