IL_8G38_140

3D structure

PDB id

8G38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

8G38|1|v|A|532, 8G38|1|v|U|534, 8G38|1|v|A|535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G38_140 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1256

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8G38|1|v|G|515
8G38|1|v|U|516
8G38|1|v|G|517
8G38|1|v|C|518
8G38|1|v|C|519
8G38|1|v|A|520
8G38|1|v|G|521
*
8G38|1|v|C|528
8G38|1|v|G|529
8G38|1|v|G|530
8G38|1|v|U|531
8G38|1|v|A|532
8G38|1|v|A|533
8G38|1|v|U|534
8G38|1|v|A|535
8G38|1|v|C|536

Current chains

Chain v

16S

Nearby chains

Chain c

30S ribosomal protein S4

Chain k

30S ribosomal protein S12

Chain x

30S ribosomal protein S3