IL_8G38_150

3D structure

PDB id

8G38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

8G38|1|v|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G38_150 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.1866

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

8G38|1|v|U|684
8G38|1|v|G|685
8G38|1|v|U|686
8G38|1|v|A|687
8G38|1|v|G|688
*
8G38|1|v|C|699
8G38|1|v|G|700
8G38|1|v|U|701
8G38|1|v|A|702
8G38|1|v|G|703
8G38|1|v|A|704
8G38|1|v|G|705
8G38|1|v|A|706

Current chains

Chain v

16S

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain j

30S ribosomal protein S11