IL_8G4S_012

3D structure

PDB id

8G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

CAUCAC*GCCCGACG

Length

14 nucleotides

Bulged bases

8G4S|1|2|U|227, 8G4S|1|2|C|263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G4S_012 not in the Motif Atlas

Homologous match to IL_8C3A_410

Geometric discrepancy: 0.1467

The information below is about IL_8C3A_410

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.1

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

8G4S|1|2|C|225
8G4S|1|2|A|226
8G4S|1|2|U|227
8G4S|1|2|C|228
8G4S|1|2|A|229
8G4S|1|2|C|230
*
8G4S|1|2|G|260
8G4S|1|2|C|261
8G4S|1|2|C|262
8G4S|1|2|C|263
8G4S|1|2|G|264
8G4S|1|2|A|265
8G4S|1|2|C|266
8G4S|1|2|G|267

Current chains

Chain 2

18S rRNA

Nearby chains

Chain I

40S ribosomal protein S8

Chain L

SSU ribosomal protein S17P

Chain X

SSU ribosomal protein S12P