IL_8G4S_020
3D structure
- PDB id
- 8G4S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.14 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 8G4S|1|2|A|459, 8G4S|1|2|U|461
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8G4S_020 not in the Motif Atlas
- Homologous match to IL_4V88_415
- Geometric discrepancy: 0.1935
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8G4S|1|2|G|442
8G4S|1|2|U|443
8G4S|1|2|G|444
8G4S|1|2|C|445
8G4S|1|2|C|446
8G4S|1|2|A|447
8G4S|1|2|G|448
*
8G4S|1|2|C|455
8G4S|1|2|G|456
8G4S|1|2|G|457
8G4S|1|2|U|458
8G4S|1|2|A|459
8G4S|1|2|A|460
8G4S|1|2|U|461
8G4S|1|2|U|462
8G4S|1|2|C|463
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain D
- Ribosomal protein S3
- Chain X
- SSU ribosomal protein S12P
- Chain e
- 40S ribosomal protein S30
- Chain i
- Transfer RNA; tRNA
- Chain k
- mRNA
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