IL_8G4S_031

3D structure

PDB id

8G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

8G4S|1|2|G|627

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G4S_031 not in the Motif Atlas

Geometric match to IL_4V88_431

Geometric discrepancy: 0.1456

The information below is about IL_4V88_431

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8G4S|1|2|C|625
8G4S|1|2|G|626
8G4S|1|2|G|627
8G4S|1|2|G|628
8G4S|1|2|G|629
*
8G4S|1|2|C|701
8G4S|1|2|A|702
8G4S|1|2|A|703
8G4S|1|2|G|704

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

40S ribosomal protein S3a

Chain N

Ribosomal protein S13

Chain a

40S ribosomal protein S26