IL_8G4S_041

3D structure

PDB id

8G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G4S_041 not in the Motif Atlas

Homologous match to IL_8C3A_446

Geometric discrepancy: 0.1028

The information below is about IL_8C3A_446

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

8G4S|1|2|G|852
8G4S|1|2|G|853
8G4S|1|2|A|854
8G4S|1|2|G|855
8G4S|1|2|U|856
8G4S|1|2|A|857
8G4S|1|2|U|858
8G4S|1|2|G|859
*
8G4S|1|2|U|870
8G4S|1|2|G|871
8G4S|1|2|A|872
8G4S|1|2|A|873
8G4S|1|2|A|874
8G4S|1|2|C|875

Current chains

Chain 2

18S rRNA

Nearby chains

Chain X

SSU ribosomal protein S12P