IL_8G4S_044
3D structure
- PDB id
- 8G4S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.14 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 8G4S|1|2|C|899, 8G4S|1|2|C|900
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8G4S_044 not in the Motif Atlas
- Homologous match to IL_8C3A_449
- Geometric discrepancy: 0.126
- The information below is about IL_8C3A_449
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.10
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 16
Unit IDs
8G4S|1|2|A|898
8G4S|1|2|C|899
8G4S|1|2|C|900
8G4S|1|2|A|901
*
8G4S|1|2|U|1302
8G4S|1|2|C|1303
8G4S|1|2|C|1304
8G4S|1|2|C|1305
8G4S|1|2|U|1306
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain F
- SSU ribosomal protein S7P (Fragment)
- Chain Q
- Ribosomal protein S16
- Chain c
- Ribosomal protein S28
- Chain g
- Transfer RNA; tRNA
- Chain k
- mRNA
Coloring options: