IL_8G4S_076
3D structure
- PDB id
- 8G4S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.14 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 8G4S|1|2|C|1013, 8G4S|1|2|U|1135, 8G4S|1|2|G|1138
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8G4S_076 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.1745
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8G4S|1|2|U|1011
8G4S|1|2|G|1012
8G4S|1|2|C|1013
8G4S|1|2|A|1014
8G4S|1|2|U|1015
8G4S|1|2|G|1016
8G4S|1|2|G|1017
*
8G4S|1|2|U|1133
8G4S|1|2|C|1134
8G4S|1|2|U|1135
8G4S|1|2|G|1136
8G4S|1|2|U|1137
8G4S|1|2|G|1138
8G4S|1|2|A|1139
8G4S|1|2|U|1140
8G4S|1|2|G|1141
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain D
- Ribosomal protein S3
- Chain K
- Ribosomal protein S10B
- Chain U
- Ribosomal protein S20
- Chain d
- Ribosomal protein S29A
- Chain i
- Transfer RNA; tRNA
- Chain k
- mRNA
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