IL_8G5Y_223

3D structure

PDB id

8G5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

GACU*AGGCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G5Y_223 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3993

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

8G5Y|1|S2|G|535
8G5Y|1|S2|A|536
8G5Y|1|S2|C|537
8G5Y|1|S2|U|538
*
8G5Y|1|S2|A|545
8G5Y|1|S2|G|546
8G5Y|1|S2|G|547
8G5Y|1|S2|C|548
8G5Y|1|S2|C|549

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Se

FAU ubiquitin-like and ribosomal protein S30