IL_8G5Z_062

3D structure

PDB id

8G5Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

G(OMG)G*UAAUC

Length

8 nucleotides

Bulged bases

8G5Z|1|L5|A|1637, 8G5Z|1|L5|A|1638

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G5Z_062 not in the Motif Atlas

Geometric match to IL_5TBW_033

Geometric discrepancy: 0.0815

The information below is about IL_5TBW_033

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_90991.8

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

8G5Z|1|L5|G|1624
8G5Z|1|L5|OMG|1625
8G5Z|1|L5|G|1626
*
8G5Z|1|L5|U|1636
8G5Z|1|L5|A|1637
8G5Z|1|L5|A|1638
8G5Z|1|L5|U|1639
8G5Z|1|L5|C|1640

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

uL2

Chain LN

60S ribosomal protein L15

Chain LP

60S ribosomal protein L17

Chain Lj

60S ribosomal protein L37