IL_8G5Z_071

3D structure

PDB id

8G5Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

GGCC*GAUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G5Z_071 not in the Motif Atlas

Geometric match to IL_1D4R_003

Geometric discrepancy: 0.196

The information below is about IL_1D4R_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8G5Z|1|L5|G|1760
8G5Z|1|L5|G|1761
8G5Z|1|L5|C|1762
8G5Z|1|L5|C|1763
*
8G5Z|1|L5|G|1769
8G5Z|1|L5|A|1770
8G5Z|1|L5|U|1771
8G5Z|1|L5|C|1772

Current chains

Chain L5

28S rRNA

Nearby chains