3D structure

PDB id
8G5Z (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.64 Å

Loop

Sequence
GACAGGA(OMU)UG*CUCGAUUC
Length
18 nucleotides
Bulged bases
8G5Z|1|S2|G|1285
QA status
Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G5Z_336 not in the Motif Atlas
Homologous match to IL_8P9A_470
Geometric discrepancy: 0.3046
The information below is about IL_8P9A_470
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_28304.1
Basepair signature
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW
Number of instances in this motif group
1

Unit IDs

8G5Z|1|S2|G|1281
8G5Z|1|S2|A|1282
8G5Z|1|S2|C|1283
8G5Z|1|S2|A|1284
8G5Z|1|S2|G|1285
8G5Z|1|S2|G|1286
8G5Z|1|S2|A|1287
8G5Z|1|S2|OMU|1288
8G5Z|1|S2|U|1289
8G5Z|1|S2|G|1290
*
8G5Z|1|S2|C|1309
8G5Z|1|S2|U|1310
8G5Z|1|S2|C|1311
8G5Z|1|S2|G|1312
8G5Z|1|S2|A|1313
8G5Z|1|S2|U|1314
8G5Z|1|S2|U|1315
8G5Z|1|S2|C|1316

Current chains

Chain S2
18S rRNA

Nearby chains

Chain SK
eS10
Chain SM
eS12
Chain Sd
40S ribosomal protein S29
Chain Sf
eS31

Coloring options:


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