IL_8G60_008

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

8G60|1|L5|G|119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G60_008 not in the Motif Atlas

Geometric match to IL_1NBS_009

Geometric discrepancy: 0.2386

The information below is about IL_1NBS_009

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.1

Basepair signature

cWW-cWW

Number of instances in this motif group

27

Unit IDs

8G60|1|L5|C|118
8G60|1|L5|G|119
8G60|1|L5|A|120
8G60|1|L5|A|121
*
8G60|1|L5|U|152
8G60|1|L5|G|153

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LG

eL8

Chain LN

eL15

Chain Lh

uL29