IL_8G60_042

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

8G60|1|L5|G|748, 8G60|1|L5|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G60_042 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1576

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8G60|1|L5|G|745
8G60|1|L5|A|746
8G60|1|L5|A|747
8G60|1|L5|G|748
8G60|1|L5|G|749
8G60|1|L5|U|750
8G60|1|L5|G|751
8G60|1|L5|G|752
*
8G60|1|L5|U|911
8G60|1|L5|G|912
8G60|1|L5|U|913
8G60|1|L5|U|914
8G60|1|L5|A|915
8G60|1|L5|C|916
8G60|1|L5|A|917
8G60|1|L5|G|918
8G60|1|L5|C|919

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LM

eL14

Chain LS

eL20