IL_8G60_084

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

8G60|1|L5|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G60_084 not in the Motif Atlas

Homologous match to IL_5TBW_054

Geometric discrepancy: 0.1469

The information below is about IL_5TBW_054

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

8G60|1|L5|U|1957
8G60|1|L5|A|1958
8G60|1|L5|U|1959
8G60|1|L5|A|1960
8G60|1|L5|G|1961
8G60|1|L5|A|1962
8G60|1|L5|C|1963
8G60|1|L5|A|1964
8G60|1|L5|G|1965
*
8G60|1|L5|C|2022
8G60|1|L5|C|2023
8G60|1|L5|G|2024
8G60|1|L5|A|2025
8G60|1|L5|A|2026

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lm

eL40

Chain Lq

uL10