IL_8G60_088

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CGC*GGUG

Length

7 nucleotides

Bulged bases

8G60|1|L5|G|2343

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G60_088 not in the Motif Atlas

Homologous match to IL_5TBW_057

Geometric discrepancy: 0.0502

The information below is about IL_5TBW_057

Detailed Annotation

Isolated cWS basepair

Broad Annotation

Isolated cWS basepair

Motif group

IL_73554.3

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

10

Unit IDs

8G60|1|L5|C|2290
8G60|1|L5|G|2291
8G60|1|L5|C|2292
*
8G60|1|L5|G|2342
8G60|1|L5|G|2343
8G60|1|L5|U|2344
8G60|1|L5|G|2345

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

uL4

Chain La

uL15

Chain Le

eL32

Chain Lr

eL28