IL_8G60_165

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

UGUA(PSU)(OMG)U*GCGAAG

Length

13 nucleotides

Bulged bases

8G60|1|L5|U|4634

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G60_165 not in the Motif Atlas

Geometric match to IL_3BBM_001

Geometric discrepancy: 0.2971

The information below is about IL_3BBM_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47352.1

Basepair signature

cWW-cWW-L-R-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

8G60|1|L5|U|4632
8G60|1|L5|G|4633
8G60|1|L5|U|4634
8G60|1|L5|A|4635
8G60|1|L5|PSU|4636
8G60|1|L5|OMG|4637
8G60|1|L5|U|4638
*
8G60|1|L5|G|4661
8G60|1|L5|C|4662
8G60|1|L5|G|4663
8G60|1|L5|A|4664
8G60|1|L5|A|4665
8G60|1|L5|G|4666

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

uL3

Chain LW

eL24

Chain Ld

eL31