IL_8G60_179

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

G(PSU)U*GUCAGC

Length

9 nucleotides

Bulged bases

8G60|1|L5|G|5049

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G60_179 not in the Motif Atlas

Homologous match to IL_5TBW_132

Geometric discrepancy: 0.3367

The information below is about IL_5TBW_132

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8G60|1|L5|G|5000
8G60|1|L5|PSU|5001
8G60|1|L5|U|5002
*
8G60|1|L5|G|5045
8G60|1|L5|U|5046
8G60|1|L5|C|5047
8G60|1|L5|A|5048
8G60|1|L5|G|5049
8G60|1|L5|C|5050

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

uL3

Chain LW

eL24

Chain Ld

eL31