3D structure

PDB id
8G60 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.54 Å

Loop

Sequence
GUGCCAG*CGG(OMU)AAUUC
Length
16 nucleotides
Bulged bases
8G60|1|S2|A|628, 8G60|1|S2|U|630, 8G60|1|S2|U|631
QA status
Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G60_226 not in the Motif Atlas
Homologous match to IL_4V88_415
Geometric discrepancy: 0.101
The information below is about IL_4V88_415
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.1
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
5

Unit IDs

8G60|1|S2|G|611
8G60|1|S2|U|612
8G60|1|S2|G|613
8G60|1|S2|C|614
8G60|1|S2|C|615
8G60|1|S2|A|616
8G60|1|S2|G|617
*
8G60|1|S2|C|624
8G60|1|S2|G|625
8G60|1|S2|G|626
8G60|1|S2|OMU|627
8G60|1|S2|A|628
8G60|1|S2|A|629
8G60|1|S2|U|630
8G60|1|S2|U|631
8G60|1|S2|C|632

Current chains

Chain S2
18S rRNA

Nearby chains

Chain At
Transfer RNA; tRNA
Chain SD
uS3
Chain SX
uS12
Chain Se
eS30
Chain mR
mRNA

Coloring options:


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