IL_8G60_241

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G60_241 not in the Motif Atlas

Homologous match to IL_4V88_432

Geometric discrepancy: 0.0823

The information below is about IL_4V88_432

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8G60|1|S2|G|942
8G60|1|S2|U|943
8G60|1|S2|A|944
8G60|1|S2|U|945
*
8G60|1|S2|A|981
8G60|1|S2|G|982
8G60|1|S2|A|983
8G60|1|S2|C|984

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LA

uL2

Chain SB

eS1

Chain SO

uS11