3D structure

PDB id
8G60 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.54 Å

Loop

Sequence
UGG*UCUGUGA
Length
10 nucleotides
Bulged bases
8G60|1|S2|U|1494, 8G60|1|S2|G|1497
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G60_262 not in the Motif Atlas
Homologous match to IL_4V88_451
Geometric discrepancy: 0.1111
The information below is about IL_4V88_451
Detailed Annotation
Minor groove platform with extra cWW
Broad Annotation
Minor groove platform
Motif group
IL_97255.1
Basepair signature
cWW-tSH-L-cWW-L
Number of instances in this motif group
5

Unit IDs

8G60|1|S2|U|1333
8G60|1|S2|G|1334
8G60|1|S2|G|1335
*
8G60|1|S2|U|1492
8G60|1|S2|C|1493
8G60|1|S2|U|1494
8G60|1|S2|G|1495
8G60|1|S2|U|1496
8G60|1|S2|G|1497
8G60|1|S2|A|1498

Current chains

Chain S2
18S rRNA

Nearby chains

Chain SD
uS3
Chain SK
eS10
Chain SU
uS10
Chain Sd
uS14

Coloring options:


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