IL_8G60_305

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

AACAA(OMU)G*C(PSU)A(PSU)

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G60_305 not in the Motif Atlas

Homologous match to IL_8C3A_080

Geometric discrepancy: 0.2768

The information below is about IL_8C3A_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49460.3

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8G60|1|L5|A|2832
8G60|1|L5|A|2833
8G60|1|L5|C|2834
8G60|1|L5|A|2835
8G60|1|L5|A|2836
8G60|1|L5|OMU|2837
8G60|1|L5|G|2838
*
8G60|1|L5|C|3850
8G60|1|L5|PSU|3851
8G60|1|L5|A|3852
8G60|1|L5|PSU|3853

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

uL3

Chain LP

uL22

Chain Ld

eL31