IL_8G60_320

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

UGUA(PSU)(OMG)*CGAAG

Length

11 nucleotides

Bulged bases

8G60|1|L5|U|4634, 8G60|1|L5|PSU|4636

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G60_320 not in the Motif Atlas

Homologous match to IL_8C3A_127

Geometric discrepancy: 0.439

The information below is about IL_8C3A_127

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

8G60|1|L5|U|4632
8G60|1|L5|G|4633
8G60|1|L5|U|4634
8G60|1|L5|A|4635
8G60|1|L5|PSU|4636
8G60|1|L5|OMG|4637
*
8G60|1|L5|C|4662
8G60|1|L5|G|4663
8G60|1|L5|A|4664
8G60|1|L5|A|4665
8G60|1|L5|G|4666

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

uL3

Chain LW

eL24

Chain Ld

eL31