IL_8G61_034

3D structure

PDB id

8G61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

UUUC*GG

Length

6 nucleotides

Bulged bases

8G61|1|L5|U|513

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G61_034 not in the Motif Atlas

Geometric match to IL_5ML7_009

Geometric discrepancy: 0.2844

The information below is about IL_5ML7_009

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

8G61|1|L5|U|512
8G61|1|L5|U|513
8G61|1|L5|U|514
8G61|1|L5|C|515
*
8G61|1|L5|G|646
8G61|1|L5|G|647

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13