IL_8G61_052

3D structure

PDB id

8G61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G61_052 not in the Motif Atlas

Geometric match to IL_4LFB_060

Geometric discrepancy: 0.1288

The information below is about IL_4LFB_060

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8G61|1|L5|C|1431
8G61|1|L5|G|1432
8G61|1|L5|A|1433
8G61|1|L5|G|1434
*
8G61|1|L5|C|1450
8G61|1|L5|G|1451
8G61|1|L5|A|1452
8G61|1|L5|G|1453

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LQ

60S ribosomal protein L18

Chain Lb

60S ribosomal protein L29