IL_8G61_059

3D structure

PDB id

8G61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G61_059 not in the Motif Atlas

Geometric match to IL_4V9F_027

Geometric discrepancy: 0.0793

The information below is about IL_4V9F_027

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

8G61|1|L5|C|1551
8G61|1|L5|G|1552
8G61|1|L5|A|1553
8G61|1|L5|A|1554
8G61|1|L5|G|1555
*
8G61|1|L5|U|1572
8G61|1|L5|G|1573
8G61|1|L5|G|1574
8G61|1|L5|A|1575
8G61|1|L5|G|1576

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

uL2

Chain LR

60S ribosomal protein L19

Chain Lp

60S ribosomal protein L37a