IL_8G61_070

3D structure

PDB id

8G61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

UCUU*AA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G61_070 not in the Motif Atlas

Geometric match to IL_3IWN_005

Geometric discrepancy: 0.3053

The information below is about IL_3IWN_005

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_15052.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

8

Unit IDs

8G61|1|L5|U|1754
8G61|1|L5|C|1755
8G61|1|L5|U|1756
8G61|1|L5|U|1757
*
8G61|1|L5|A|1775
8G61|1|L5|A|1776

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein L5