3D structure

PDB id
8G61 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.94 Å

Loop

Sequence
CUGAG*CGAAAG
Length
11 nucleotides
Bulged bases
8G61|1|L5|A|2512, 8G61|1|L5|A|2513
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G61_093 not in the Motif Atlas
Homologous match to IL_8C3A_067
Geometric discrepancy: 0.0977
The information below is about IL_8C3A_067
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_89002.4
Basepair signature
cWW-tWH-cWW-L-cWW-tHS
Number of instances in this motif group
15

Unit IDs

8G61|1|L5|C|2446
8G61|1|L5|U|2447
8G61|1|L5|G|2448
8G61|1|L5|A|2449
8G61|1|L5|G|2450
*
8G61|1|L5|C|2509
8G61|1|L5|G|2510
8G61|1|L5|A|2511
8G61|1|L5|A|2512
8G61|1|L5|A|2513
8G61|1|L5|G|2514

Current chains

Chain L5
28S rRNA

Nearby chains

Chain L8
5.8S ribosomal RNA; 5.8S rRNA
Chain LA
uL2
Chain Lg
60S ribosomal protein L34
Chain Lj
60S ribosomal protein L37
Chain Ll
60S ribosomal protein L39

Coloring options:


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