IL_8G61_116

3D structure

PDB id

8G61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

8G61|1|L5|A|3663, 8G61|1|L5|U|3679, 8G61|1|L5|C|3683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G61_116 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.0718

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

8G61|1|L5|C|3660
8G61|1|L5|G|3661
8G61|1|L5|A|3662
8G61|1|L5|A|3663
8G61|1|L5|G|3664
8G61|1|L5|G|3665
*
8G61|1|L5|U|3677
8G61|1|L5|G|3678
8G61|1|L5|U|3679
8G61|1|L5|U|3680
8G61|1|L5|G|3681
8G61|1|L5|A|3682
8G61|1|L5|C|3683
8G61|1|L5|G|3684

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

uL2

Chain Lp

60S ribosomal protein L37a