IL_8G61_133

3D structure

PDB id

8G61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

C(OMU)C*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G61_133 not in the Motif Atlas

Geometric match to IL_4WF9_042

Geometric discrepancy: 0.1293

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8G61|1|L5|C|3924
8G61|1|L5|OMU|3925
8G61|1|L5|C|3926
*
8G61|1|L5|G|4185
8G61|1|L5|A|4186
8G61|1|L5|G|4187

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

uL2

Chain LN

60S ribosomal protein L15

Chain Lo

60S ribosomal protein L36a