IL_8G61_138
3D structure
- PDB id
- 8G61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.94 Å
Loop
- Sequence
- GGUGUAGAAUAA*UAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8G61_138 not in the Motif Atlas
- Geometric match to IL_4LFB_006
- Geometric discrepancy: 0.2241
- The information below is about IL_4LFB_006
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 174
Unit IDs
8G61|1|L5|G|3955
8G61|1|L5|G|3956
8G61|1|L5|U|3957
8G61|1|L5|G|3958
8G61|1|L5|U|3959
8G61|1|L5|A|3960
8G61|1|L5|G|3961
8G61|1|L5|A|3962
8G61|1|L5|A|3963
8G61|1|L5|U|3964
8G61|1|L5|A|3965
8G61|1|L5|A|3966
*
8G61|1|L5|U|4055
8G61|1|L5|A|4056
8G61|1|L5|C|4057
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain Lz
- 60S ribosomal protein L10a
- Chain SB
- 40S ribosomal protein S3a
- Chain SF
- 40S ribosomal protein S5
- Chain Sc
- 40S ribosomal protein S28
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