IL_8G61_149

3D structure

PDB id

8G61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G61_149 not in the Motif Atlas

Geometric match to IL_5TBW_106

Geometric discrepancy: 0.1396

The information below is about IL_5TBW_106

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8G61|1|L5|C|4412
8G61|1|L5|C|4413
8G61|1|L5|A|4414
8G61|1|L5|A|4415
8G61|1|L5|G|4416
*
8G61|1|L5|C|4426
8G61|1|L5|G|4427
8G61|1|L5|A|4428
8G61|1|L5|C|4429
8G61|1|L5|G|4430

Current chains

Chain L5

28S rRNA

Nearby chains

Chain At

Transfer RNA; tRNA

Chain LI

60S ribosomal protein L10

Chain Lm

eL40