IL_8G61_222

3D structure

PDB id

8G61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

GAG*CGAGG(A2M)UC

Length

11 nucleotides

Bulged bases

8G61|1|S2|G|588

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G61_222 not in the Motif Atlas

Geometric match to IL_7RQB_082

Geometric discrepancy: 0.3747

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8G61|1|S2|G|563
8G61|1|S2|A|564
8G61|1|S2|G|565
*
8G61|1|S2|C|585
8G61|1|S2|G|586
8G61|1|S2|A|587
8G61|1|S2|G|588
8G61|1|S2|G|589
8G61|1|S2|A2M|590
8G61|1|S2|U|591
8G61|1|S2|C|592

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein S9

Chain Se

FAU ubiquitin-like and ribosomal protein S30