3D structure

PDB id
8G61 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.94 Å

Loop

Sequence
CGGCC*GAAUG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G61_240 not in the Motif Atlas
Geometric match to IL_5TBW_121
Geometric discrepancy: 0.3162
The information below is about IL_5TBW_121
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_05145.3
Basepair signature
cWW-cWW-cWW-cWW-cWW
Number of instances in this motif group
13

Unit IDs

8G61|1|S2|C|927
8G61|1|S2|G|928
8G61|1|S2|G|929
8G61|1|S2|C|930
8G61|1|S2|C|931
*
8G61|1|S2|G|1010
8G61|1|S2|A|1011
8G61|1|S2|A|1012
8G61|1|S2|U|1013
8G61|1|S2|G|1014

Current chains

Chain S2
18S rRNA

Nearby chains

Chain SB
40S ribosomal protein S3a
Chain SN
40S ribosomal protein S13
Chain Sb
40S ribosomal protein S27

Coloring options:


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