3D structure

PDB id
8G61 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.94 Å

Loop

Sequence
CGA*UCUUUGG
Length
10 nucleotides
Bulged bases
8G61|1|S2|C|1153, 8G61|1|S2|U|1155, 8G61|1|S2|G|1157
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G61_246 not in the Motif Atlas
Homologous match to IL_4V88_437
Geometric discrepancy: 0.1274
The information below is about IL_4V88_437
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_62898.1
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
2

Unit IDs

8G61|1|S2|C|1091
8G61|1|S2|G|1092
8G61|1|S2|A|1093
*
8G61|1|S2|U|1152
8G61|1|S2|C|1153
8G61|1|S2|U|1154
8G61|1|S2|U|1155
8G61|1|S2|U|1156
8G61|1|S2|G|1157
8G61|1|S2|G|1158

Current chains

Chain S2
18S rRNA

Nearby chains

Chain SC
40S ribosomal protein S2
Chain SL
40S ribosomal protein S11
Chain SN
40S ribosomal protein S13
Chain SV
40S ribosomal protein S21
Chain SW
40S ribosomal protein S15a
Chain SX
uS12
Chain Sb
40S ribosomal protein S27

Coloring options:


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