3D structure

PDB id
8G61 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.94 Å

Loop

Sequence
CCACU*A(OMG)
Length
7 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G61_330 not in the Motif Atlas
Homologous match to IL_8C3A_416
Geometric discrepancy: 0.1135
The information below is about IL_8C3A_416
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_03109.1
Basepair signature
cWW-cSH-cWS-tWH-cWW
Number of instances in this motif group
5

Unit IDs

8G61|1|S2|C|491
8G61|1|S2|C|492
8G61|1|S2|A|493
8G61|1|S2|C|494
8G61|1|S2|U|495
*
8G61|1|S2|A|508
8G61|1|S2|OMG|509

Current chains

Chain S2
18S rRNA

Nearby chains

Chain SE
40S ribosomal protein S4, X isoform
Chain SJ
40S ribosomal protein S9
Chain SY
40S ribosomal protein S24

Coloring options:


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